Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HMGN4O00479 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGN4O00479 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGN4O00479 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGN4O00479 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGN4O00479 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGN4O00479 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HMGN4O00479 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
HMGN4O00479 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGN4O00479 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGN4O00479 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
HMGN4O00479 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HMGN4O00479 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGN4O00479 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
HMGN4O00479 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGN4O00479 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGN4O00479 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGN4O00479 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGN4O00479 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGN4O00479 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.23
HMGN4O00479 AC022616.7-201ENST00000525383 220 ntBASIC16.46■□□□□ 0.23
HMGN4O00479 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGN4O00479 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.46■□□□□ 0.23
HMGN4O00479 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.46■□□□□ 0.23
HMGN4O00479 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HMGN4O00479 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGN4O00479 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGN4O00479 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HMGN4O00479 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HMGN4O00479 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HMGN4O00479 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
HMGN4O00479 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.46■□□□□ 0.22
HMGN4O00479 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGN4O00479 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HMGN4O00479 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.45■□□□□ 0.22
HMGN4O00479 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
HMGN4O00479 RCN1P1-201ENST00000400413 996 ntBASIC16.45■□□□□ 0.22
HMGN4O00479 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGN4O00479 LTBR-211ENST00000543190 785 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGN4O00479 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGN4O00479 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGN4O00479 RN7SL850P-201ENST00000579959 291 ntBASIC16.45■□□□□ 0.22
HMGN4O00479 CLN6-214ENST00000636314 442 ntTSL 3 BASIC16.45■□□□□ 0.22
HMGN4O00479 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.45■□□□□ 0.22
HMGN4O00479 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HMGN4O00479 AC097374.2-201ENST00000618617 1306 ntBASIC16.45■□□□□ 0.22
HMGN4O00479 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGN4O00479 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HMGN4O00479 AC010460.3-201ENST00000511359 1579 ntBASIC16.44■□□□□ 0.22
HMGN4O00479 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.44■□□□□ 0.22
HMGN4O00479 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms