Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC13.58□□□□□ -0.23
COL6A5A8TX70 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A5A8TX70 AL499627.1-201ENST00000569373 2188 ntBASIC13.58□□□□□ -0.23
COL6A5A8TX70 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A5A8TX70 AC020907.1-201ENST00000616460 1350 ntBASIC13.58□□□□□ -0.23
COL6A5A8TX70 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL6A5A8TX70 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 AC027369.6-201ENST00000525520 931 ntBASIC13.58□□□□□ -0.24
COL6A5A8TX70 FUZ-207ENST00000526575 482 ntTSL 4 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 TMEM261P1-201ENST00000604899 340 ntBASIC13.58□□□□□ -0.24
COL6A5A8TX70 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 AC241585.1-201ENST00000433527 519 ntBASIC13.58□□□□□ -0.24
COL6A5A8TX70 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
COL6A5A8TX70 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL6A5A8TX70 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC012676.1-201ENST00000574705 1949 ntBASIC13.57□□□□□ -0.24
COL6A5A8TX70 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 RPL28-204ENST00000431533 590 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC092506.1-202ENST00000401022 528 ntBASIC13.57□□□□□ -0.24
COL6A5A8TX70 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 RN7SL752P-201ENST00000463779 287 ntBASIC13.57□□□□□ -0.24
COL6A5A8TX70 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
COL6A5A8TX70 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC13.57□□□□□ -0.24
COL6A5A8TX70 AC097637.2-201ENST00000624096 1997 ntBASIC13.56□□□□□ -0.24
COL6A5A8TX70 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 AC009477.1-201ENST00000452936 217 ntBASIC13.56□□□□□ -0.24
COL6A5A8TX70 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 AP000842.3-202ENST00000569238 1080 ntBASIC13.56□□□□□ -0.24
COL6A5A8TX70 COQ4-205ENST00000609948 956 ntTSL 2 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
COL6A5A8TX70 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
COL6A5A8TX70 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms