Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 AL138831.2-201ENST00000606564 490 ntBASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATG4BQ9Y4P1 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 BX276092.7-203ENST00000637198 1536 ntBASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 TOB2P1-201ENST00000469761 992 ntBASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 VENTXP7-201ENST00000475503 772 ntBASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4BQ9Y4P1 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.77■□□□□ 0.27
ATG4BQ9Y4P1 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 AC133963.1-201ENST00000504166 1679 ntBASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 ATP5G2P1-201ENST00000433580 426 ntBASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 AC007967.3-201ENST00000434308 558 ntBASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 LINC00265-3P-201ENST00000447588 903 ntBASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 AC092119.3-201ENST00000612618 583 ntBASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
ATG4BQ9Y4P1 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 LETM1P2-201ENST00000597330 2178 ntBASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4BQ9Y4P1 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms