Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.28■□□□□ 0.68
HIPK3Q9H422 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HIPK3Q9H422 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HIPK3Q9H422 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HIPK3Q9H422 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
HIPK3Q9H422 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.28■□□□□ 0.68
HIPK3Q9H422 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC19.28■□□□□ 0.68
HIPK3Q9H422 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HIPK3Q9H422 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 AC025580.3-201ENST00000617932 1424 ntBASIC19.27■□□□□ 0.68
HIPK3Q9H422 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 AL139400.1-201ENST00000366220 510 ntBASIC19.27■□□□□ 0.68
HIPK3Q9H422 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 AC074386.1-202ENST00000463561 864 ntBASIC19.27■□□□□ 0.68
HIPK3Q9H422 LHX6-205ENST00000464484 666 ntTSL 2 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
HIPK3Q9H422 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HIPK3Q9H422 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HIPK3Q9H422 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
HIPK3Q9H422 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 AP002414.1-201ENST00000391405 1147 ntBASIC19.26■□□□□ 0.67
HIPK3Q9H422 PTCHD3P3-201ENST00000403073 906 ntBASIC19.26■□□□□ 0.67
HIPK3Q9H422 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 RHOQP3-201ENST00000437982 621 ntBASIC19.26■□□□□ 0.67
HIPK3Q9H422 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 AC004449.1-201ENST00000564240 433 ntBASIC19.26■□□□□ 0.67
HIPK3Q9H422 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 GGTLC5P-201ENST00000617623 998 ntBASIC19.26■□□□□ 0.67
HIPK3Q9H422 AC091812.2-201ENST00000619081 385 ntBASIC19.26■□□□□ 0.67
HIPK3Q9H422 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.26■□□□□ 0.67
HIPK3Q9H422 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIPK3Q9H422 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 AC098818.2-201ENST00000564925 2320 ntBASIC19.25■□□□□ 0.67
HIPK3Q9H422 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 NEK7-201ENST00000367383 586 ntTSL 2 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 TMED1-207ENST00000591695 809 ntTSL 5 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 AC004835.2-201ENST00000603762 682 ntBASIC19.25■□□□□ 0.67
HIPK3Q9H422 AC019129.2-201ENST00000609837 1235 ntBASIC19.25■□□□□ 0.67
HIPK3Q9H422 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.25■□□□□ 0.67
HIPK3Q9H422 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HIPK3Q9H422 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms