Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PAAF1Q9BRP4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.84■□□□□ 0.61
PAAF1Q9BRP4 AC006504.4-201ENST00000592118 1568 ntBASIC18.84■□□□□ 0.61
PAAF1Q9BRP4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.84■□□□□ 0.61
PAAF1Q9BRP4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PAAF1Q9BRP4 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
PAAF1Q9BRP4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
PAAF1Q9BRP4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.83■□□□□ 0.61
PAAF1Q9BRP4 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AC007967.2-201ENST00000432613 625 ntBASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 STK25P1-201ENST00000585406 838 ntBASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AC006557.2-201ENST00000592985 1240 ntBASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AL139424.1-201ENST00000607572 797 ntBASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AC004706.3-202ENST00000621574 984 ntBASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
PAAF1Q9BRP4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 AC003669.1-201ENST00000334569 611 ntBASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 ELK2BP-201ENST00000415014 1224 ntBASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 FAM197Y3-203ENST00000618346 717 ntBASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 AL589182.2-201ENST00000619332 1049 ntBASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.82■□□□□ 0.6
PAAF1Q9BRP4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 ABALON-201ENST00000629058 1903 ntBASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.81■□□□□ 0.6
PAAF1Q9BRP4 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms