Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
ATG4AQ8WYN0 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
ATG4AQ8WYN0 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 AC092597.1-201ENST00000487352 616 ntBASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
ATG4AQ8WYN0 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 HLA-F-220ENST00000434407 884 ntBASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 COX11P1-201ENST00000489116 835 ntBASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 AC011558.1-201ENST00000623459 338 ntBASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 AC066615.1-201ENST00000640911 628 ntBASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4AQ8WYN0 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4AQ8WYN0 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms