Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 TERF1P1-201ENST00000311003 1181 ntBASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 RN7SL371P-201ENST00000578099 267 ntBASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 AL590326.2-201ENST00000625139 305 ntBASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 AL355312.1-201ENST00000407115 2176 ntBASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 MIR149-201ENST00000384879 89 ntBASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 MCCD1P1-208ENST00000445732 328 ntBASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 SDHAP2-201ENST00000455183 2001 ntBASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 AC133963.1-201ENST00000504166 1679 ntBASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
DEPDC4Q8N2C3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 KRT18P57-201ENST00000443599 1254 ntBASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.52■□□□□ 0.24
DEPDC4Q8N2C3 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 AL596257.1-201ENST00000641463 2694 ntBASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.52■□□□□ 0.23
DEPDC4Q8N2C3 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 AL163051.1-201ENST00000569214 1512 ntBASIC16.51■□□□□ 0.23
DEPDC4Q8N2C3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms