Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 AC068880.1-201ENST00000507289 2297 ntBASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 AC026471.1-201ENST00000564629 3026 ntBASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.35■□□□□ 0.21
C9orf40Q8IXQ3 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 AL049757.1-201ENST00000616842 1596 ntBASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 AC134043.2-201ENST00000624206 2238 ntBASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 ABCD1P5-201ENST00000445663 754 ntBASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 AL121894.2-201ENST00000602977 491 ntBASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 AD001527.2-201ENST00000622994 785 ntBASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
C9orf40Q8IXQ3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
C9orf40Q8IXQ3 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
C9orf40Q8IXQ3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
C9orf40Q8IXQ3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
C9orf40Q8IXQ3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.33■□□□□ 0.21
C9orf40Q8IXQ3 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
C9orf40Q8IXQ3 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
C9orf40Q8IXQ3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AC004870.1-201ENST00000315132 882 ntBASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AC005104.2-201ENST00000427818 678 ntBASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AC106795.1-205ENST00000512851 1056 ntBASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AP000867.4-201ENST00000641616 219 ntBASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 KRT8P10-201ENST00000450021 1447 ntBASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 LINC00304-203ENST00000565008 1864 ntBASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 AL355312.1-201ENST00000407115 2176 ntBASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
C9orf40Q8IXQ3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
C9orf40Q8IXQ3 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms