Protein–RNA interactions for Protein: Q5ST30

VARS2, Valine--tRNA ligase, mitochondrial, humanhuman

Known RBP Predictions only

Length 1,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2Q5ST30 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VARS2Q5ST30 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VARS2Q5ST30 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.73■□□□□ 0.59
VARS2Q5ST30 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VARS2Q5ST30 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.73■□□□□ 0.59
VARS2Q5ST30 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VARS2Q5ST30 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VARS2Q5ST30 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 BX842568.4-201ENST00000421222 227 ntBASIC18.72■□□□□ 0.59
VARS2Q5ST30 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 KRT18P27-201ENST00000427733 1299 ntBASIC18.72■□□□□ 0.59
VARS2Q5ST30 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 AC006557.2-201ENST00000592985 1240 ntBASIC18.72■□□□□ 0.59
VARS2Q5ST30 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.72■□□□□ 0.59
VARS2Q5ST30 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VARS2Q5ST30 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
VARS2Q5ST30 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 FLJ13224-201ENST00000313737 1514 ntBASIC18.71■□□□□ 0.59
VARS2Q5ST30 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 AC003669.1-201ENST00000334569 611 ntBASIC18.71■□□□□ 0.59
VARS2Q5ST30 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 UNC93B6-202ENST00000528242 690 ntBASIC18.71■□□□□ 0.59
VARS2Q5ST30 AL356488.2-201ENST00000602755 427 ntBASIC18.71■□□□□ 0.59
VARS2Q5ST30 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VARS2Q5ST30 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.71■□□□□ 0.59
VARS2Q5ST30 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 AL390728.6-201ENST00000566446 1246 ntBASIC18.7■□□□□ 0.58
VARS2Q5ST30 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 AC027601.4-201ENST00000611259 610 ntBASIC18.7■□□□□ 0.58
VARS2Q5ST30 AL589182.2-201ENST00000619332 1049 ntBASIC18.7■□□□□ 0.58
VARS2Q5ST30 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VARS2Q5ST30 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VARS2Q5ST30 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VARS2Q5ST30 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VARS2Q5ST30 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VARS2Q5ST30 KRT18P55-202ENST00000578578 1546 ntBASIC18.69■□□□□ 0.58
VARS2Q5ST30 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms