Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
USP41Q3LFD5 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
USP41Q3LFD5 AL049757.1-201ENST00000616842 1596 ntBASIC18.81■□□□□ 0.6
USP41Q3LFD5 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
USP41Q3LFD5 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
USP41Q3LFD5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 AC073621.1-201ENST00000392730 636 ntBASIC18.79■□□□□ 0.6
USP41Q3LFD5 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 AC009947.1-201ENST00000444350 727 ntBASIC18.79■□□□□ 0.6
USP41Q3LFD5 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.79■□□□□ 0.6
USP41Q3LFD5 RNA5SP416-201ENST00000516838 111 ntBASIC18.79■□□□□ 0.6
USP41Q3LFD5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
USP41Q3LFD5 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
USP41Q3LFD5 AC005332.8-201ENST00000622750 2735 ntBASIC18.79■□□□□ 0.6
USP41Q3LFD5 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 AC136632.2-201ENST00000512891 861 ntBASIC18.78■□□□□ 0.6
USP41Q3LFD5 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 AC132938.5-201ENST00000624980 1813 ntBASIC18.78■□□□□ 0.6
USP41Q3LFD5 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
USP41Q3LFD5 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
USP41Q3LFD5 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms