Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 STK25P1-201ENST00000585406 838 ntBASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 AC092865.6-201ENST00000642101 219 ntBASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SHROOM1Q2M3G4 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 RPS8P6-201ENST00000426177 609 ntBASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 AC040169.1-201ENST00000565382 521 ntBASIC20.58■□□□□ 0.89
SHROOM1Q2M3G4 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.58■□□□□ 0.88
SHROOM1Q2M3G4 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHROOM1Q2M3G4 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SHROOM1Q2M3G4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms