Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.48■□□□□ 0.39
SRP54P61011 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SRP54P61011 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
SRP54P61011 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.48■□□□□ 0.39
SRP54P61011 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.48■□□□□ 0.39
SRP54P61011 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.48■□□□□ 0.39
SRP54P61011 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SRP54P61011 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SRP54P61011 AC093909.1-201ENST00000504731 1122 ntBASIC17.48■□□□□ 0.39
SRP54P61011 SART3-203ENST00000546611 1184 ntBASIC17.48■□□□□ 0.39
SRP54P61011 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.48■□□□□ 0.39
SRP54P61011 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.48■□□□□ 0.39
SRP54P61011 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.48■□□□□ 0.39
SRP54P61011 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.48■□□□□ 0.39
SRP54P61011 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.48■□□□□ 0.39
SRP54P61011 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.48■□□□□ 0.39
SRP54P61011 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 AL356309.3-201ENST00000624132 1934 ntBASIC17.48■□□□□ 0.39
SRP54P61011 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.48■□□□□ 0.39
SRP54P61011 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.48■□□□□ 0.39
SRP54P61011 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SRP54P61011 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC17.47■□□□□ 0.39
SRP54P61011 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SRP54P61011 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.47■□□□□ 0.39
SRP54P61011 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.47■□□□□ 0.39
SRP54P61011 AC122714.2-201ENST00000502787 707 ntBASIC17.47■□□□□ 0.39
SRP54P61011 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.47■□□□□ 0.39
SRP54P61011 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.47■□□□□ 0.39
SRP54P61011 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.47■□□□□ 0.39
SRP54P61011 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.47■□□□□ 0.39
SRP54P61011 AP000867.4-201ENST00000641616 219 ntBASIC17.47■□□□□ 0.39
SRP54P61011 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.47■□□□□ 0.39
SRP54P61011 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
SRP54P61011 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.47■□□□□ 0.39
SRP54P61011 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
SRP54P61011 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.47■□□□□ 0.39
SRP54P61011 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
SRP54P61011 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.47■□□□□ 0.39
SRP54P61011 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
SRP54P61011 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
SRP54P61011 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 RPS2P28-201ENST00000314255 741 ntBASIC17.46■□□□□ 0.39
SRP54P61011 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 AC021087.4-201ENST00000563761 564 ntBASIC17.46■□□□□ 0.39
SRP54P61011 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
SRP54P61011 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.46■□□□□ 0.39
SRP54P61011 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
SRP54P61011 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SRP54P61011 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms