Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SIRPAP1-201ENST00000448467 1770 ntBASIC19.53■□□□□ 0.72
PEX3P56589 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.53■□□□□ 0.72
PEX3P56589 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.53■□□□□ 0.72
PEX3P56589 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.53■□□□□ 0.72
PEX3P56589 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.53■□□□□ 0.72
PEX3P56589 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 AC132008.2-207ENST00000454517 770 ntBASIC19.52■□□□□ 0.72
PEX3P56589 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.52■□□□□ 0.72
PEX3P56589 AC122714.2-201ENST00000502787 707 ntBASIC19.52■□□□□ 0.72
PEX3P56589 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 AC111152.3-201ENST00000569699 673 ntBASIC19.52■□□□□ 0.72
PEX3P56589 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 LINC01711-201ENST00000598340 967 ntBASIC19.52■□□□□ 0.72
PEX3P56589 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 NOC2LP2-201ENST00000407594 1944 ntBASIC19.52■□□□□ 0.72
PEX3P56589 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
PEX3P56589 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PEX3P56589 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PEX3P56589 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.52■□□□□ 0.71
PEX3P56589 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.52■□□□□ 0.71
PEX3P56589 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PEX3P56589 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.51■□□□□ 0.71
PEX3P56589 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 AC068880.1-201ENST00000507289 2297 ntBASIC19.51■□□□□ 0.71
PEX3P56589 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 AC134043.2-201ENST00000624206 2238 ntBASIC19.51■□□□□ 0.71
PEX3P56589 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 REXO1L11P-201ENST00000620964 1927 ntBASIC19.51■□□□□ 0.71
PEX3P56589 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.5■□□□□ 0.71
PEX3P56589 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PEX3P56589 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms