Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SIRPAP1-201ENST00000448467 1770 ntBASIC19.53■□□□□ 0.72
PEX3P56589 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.53■□□□□ 0.72
PEX3P56589 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.53■□□□□ 0.72
PEX3P56589 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.53■□□□□ 0.72
PEX3P56589 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.53■□□□□ 0.72
PEX3P56589 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.53■□□□□ 0.72
PEX3P56589 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PEX3P56589 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PEX3P56589 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 AC132008.2-207ENST00000454517 770 ntBASIC19.52■□□□□ 0.72
PEX3P56589 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.52■□□□□ 0.72
PEX3P56589 AC122714.2-201ENST00000502787 707 ntBASIC19.52■□□□□ 0.72
PEX3P56589 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 AC111152.3-201ENST00000569699 673 ntBASIC19.52■□□□□ 0.72
PEX3P56589 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC19.52■□□□□ 0.72
PEX3P56589 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 LINC01711-201ENST00000598340 967 ntBASIC19.52■□□□□ 0.72
PEX3P56589 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PEX3P56589 NOC2LP2-201ENST00000407594 1944 ntBASIC19.52■□□□□ 0.72
PEX3P56589 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC19.52■□□□□ 0.72
PEX3P56589 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
PEX3P56589 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
PEX3P56589 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PEX3P56589 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PEX3P56589 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.52■□□□□ 0.71
PEX3P56589 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.52■□□□□ 0.71
PEX3P56589 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PEX3P56589 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.51■□□□□ 0.71
PEX3P56589 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 AC068880.1-201ENST00000507289 2297 ntBASIC19.51■□□□□ 0.71
PEX3P56589 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
PEX3P56589 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 AC134043.2-201ENST00000624206 2238 ntBASIC19.51■□□□□ 0.71
PEX3P56589 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 REXO1L11P-201ENST00000620964 1927 ntBASIC19.51■□□□□ 0.71
PEX3P56589 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.51■□□□□ 0.71
PEX3P56589 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PEX3P56589 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.5■□□□□ 0.71
PEX3P56589 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
PEX3P56589 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
PEX3P56589 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms