Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL4A4P53420 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.82■□□□□ 0.6
COL4A4P53420 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.82■□□□□ 0.6
COL4A4P53420 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
COL4A4P53420 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.82■□□□□ 0.6
COL4A4P53420 PRYP5-201ENST00000451909 266 ntBASIC18.82■□□□□ 0.6
COL4A4P53420 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL4A4P53420 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL4A4P53420 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.82■□□□□ 0.6
COL4A4P53420 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.82■□□□□ 0.6
COL4A4P53420 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
COL4A4P53420 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
COL4A4P53420 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL4A4P53420 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A4P53420 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A4P53420 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC18.81■□□□□ 0.6
COL4A4P53420 IGHV3-65-201ENST00000523210 341 ntBASIC18.81■□□□□ 0.6
COL4A4P53420 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A4P53420 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A4P53420 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.81■□□□□ 0.6
COL4A4P53420 AC004790.2-201ENST00000623588 572 ntBASIC18.81■□□□□ 0.6
COL4A4P53420 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.81■□□□□ 0.6
COL4A4P53420 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A4P53420 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A4P53420 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.81■□□□□ 0.6
COL4A4P53420 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL4A4P53420 AL353593.2-201ENST00000602529 1483 ntBASIC18.81■□□□□ 0.6
COL4A4P53420 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.8■□□□□ 0.6
COL4A4P53420 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL4A4P53420 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.8■□□□□ 0.6
COL4A4P53420 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.8■□□□□ 0.6
COL4A4P53420 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 DUTP2-201ENST00000519164 463 ntBASIC18.8■□□□□ 0.6
COL4A4P53420 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.8■□□□□ 0.6
COL4A4P53420 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.8■□□□□ 0.6
COL4A4P53420 AC138761.1-201ENST00000584393 385 ntBASIC18.8■□□□□ 0.6
COL4A4P53420 AC004877.2-201ENST00000623941 599 ntBASIC18.8■□□□□ 0.6
COL4A4P53420 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL4A4P53420 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
COL4A4P53420 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
COL4A4P53420 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A4P53420 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A4P53420 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.79■□□□□ 0.6
COL4A4P53420 AC022145.2-201ENST00000598203 171 ntBASIC18.79■□□□□ 0.6
COL4A4P53420 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 AL035252.4-201ENST00000624174 288 ntBASIC18.79■□□□□ 0.6
COL4A4P53420 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.79■□□□□ 0.6
COL4A4P53420 AC092902.6-201ENST00000641783 218 ntBASIC18.79■□□□□ 0.6
COL4A4P53420 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A4P53420 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A4P53420 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.79■□□□□ 0.6
COL4A4P53420 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A4P53420 AC004461.1-201ENST00000412461 403 ntBASIC18.79■□□□□ 0.6
COL4A4P53420 GSAP-205ENST00000430584 600 ntTSL 5 BASIC18.79■□□□□ 0.6
COL4A4P53420 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL4A4P53420 VN2R19P-201ENST00000442399 1052 ntBASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms