Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SPDYE11-202ENST00000450699 704 ntBASIC24.36■■□□□ 1.49
MSH6P52701 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC24.36■■□□□ 1.49
MSH6P52701 AC125807.1-201ENST00000483097 614 ntBASIC24.36■■□□□ 1.49
MSH6P52701 SPDYE9P-201ENST00000570642 692 ntBASIC24.36■■□□□ 1.49
MSH6P52701 AC099522.2-201ENST00000607001 744 ntBASIC24.36■■□□□ 1.49
MSH6P52701 SPDYE10P-202ENST00000612005 668 ntBASIC24.36■■□□□ 1.49
MSH6P52701 SPDYE8P-202ENST00000612377 668 ntBASIC24.36■■□□□ 1.49
MSH6P52701 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC24.36■■□□□ 1.49
MSH6P52701 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC24.36■■□□□ 1.49
MSH6P52701 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
MSH6P52701 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC24.35■■□□□ 1.49
MSH6P52701 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 TSFM-210ENST00000550559 897 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC24.35■■□□□ 1.49
MSH6P52701 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC24.35■■□□□ 1.49
MSH6P52701 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 MIR6752-201ENST00000618442 71 ntBASIC24.35■■□□□ 1.49
MSH6P52701 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC24.35■■□□□ 1.49
MSH6P52701 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC24.35■■□□□ 1.49
MSH6P52701 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC24.35■■□□□ 1.49
MSH6P52701 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
MSH6P52701 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC24.34■■□□□ 1.49
MSH6P52701 PI4KAP1-204ENST00000612579 1703 ntBASIC24.34■■□□□ 1.49
MSH6P52701 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.49
MSH6P52701 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC24.34■■□□□ 1.49
MSH6P52701 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC24.34■■□□□ 1.49
MSH6P52701 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC24.34■■□□□ 1.49
MSH6P52701 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 LINC00982-205ENST00000420957 435 ntBASIC24.34■■□□□ 1.49
MSH6P52701 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC24.34■■□□□ 1.49
MSH6P52701 AL513480.1-201ENST00000451731 511 ntBASIC24.34■■□□□ 1.49
MSH6P52701 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 FAM86C2P-203ENST00000528684 1004 ntBASIC24.34■■□□□ 1.49
MSH6P52701 BSG-214ENST00000614867 960 ntTSL 3 BASIC24.34■■□□□ 1.49
MSH6P52701 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC24.34■■□□□ 1.49
MSH6P52701 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
MSH6P52701 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
MSH6P52701 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH6P52701 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC24.33■■□□□ 1.49
MSH6P52701 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH6P52701 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 WRB-204ENST00000398753 699 ntTSL 3 BASIC24.33■■□□□ 1.49
MSH6P52701 FAM185BP-201ENST00000443595 716 ntBASIC24.33■■□□□ 1.49
MSH6P52701 STK19B-204ENST00000512515 211 ntBASIC24.33■■□□□ 1.49
MSH6P52701 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 SLC25A39P2-201ENST00000537614 270 ntBASIC24.33■■□□□ 1.49
MSH6P52701 CR383656.12-201ENST00000549567 513 ntBASIC24.33■■□□□ 1.49
MSH6P52701 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC24.33■■□□□ 1.49
MSH6P52701 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC24.33■■□□□ 1.49
MSH6P52701 STK25P1-201ENST00000585406 838 ntBASIC24.33■■□□□ 1.49
MSH6P52701 AL390754.1-201ENST00000619088 582 ntBASIC24.33■■□□□ 1.49
MSH6P52701 AL358472.5-202ENST00000641448 1267 ntBASIC24.33■■□□□ 1.49
MSH6P52701 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
MSH6P52701 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC24.33■■□□□ 1.49
MSH6P52701 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
MSH6P52701 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
MSH6P52701 USP39-202ENST00000409025 1946 ntTSL 5 BASIC24.33■■□□□ 1.48
MSH6P52701 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC24.33■■□□□ 1.48
MSH6P52701 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC24.33■■□□□ 1.48
MSH6P52701 AC005082.1-201ENST00000413042 2259 ntBASIC24.33■■□□□ 1.48
MSH6P52701 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
MSH6P52701 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 FO538757.1-201ENST00000623083 1397 ntBASIC24.32■■□□□ 1.48
MSH6P52701 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC24.32■■□□□ 1.48
MSH6P52701 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms