Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.55■□□□□ 0.4
CXCL12P48061 FAM86GP-201ENST00000448322 971 ntBASIC17.55■□□□□ 0.4
CXCL12P48061 AC023141.5-201ENST00000458585 616 ntBASIC17.55■□□□□ 0.4
CXCL12P48061 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CXCL12P48061 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
CXCL12P48061 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.55■□□□□ 0.4
CXCL12P48061 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.55■□□□□ 0.4
CXCL12P48061 MIR4745-201ENST00000577608 62 ntBASIC17.55■□□□□ 0.4
CXCL12P48061 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.55■□□□□ 0.4
CXCL12P48061 AC022145.2-201ENST00000598203 171 ntBASIC17.55■□□□□ 0.4
CXCL12P48061 AC116407.2-201ENST00000613639 860 ntBASIC17.55■□□□□ 0.4
CXCL12P48061 LINC00628-201ENST00000628516 1289 ntBASIC17.55■□□□□ 0.4
CXCL12P48061 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
CXCL12P48061 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CXCL12P48061 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CXCL12P48061 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.55■□□□□ 0.4
CXCL12P48061 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.55■□□□□ 0.4
CXCL12P48061 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.55■□□□□ 0.4
CXCL12P48061 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CXCL12P48061 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.54■□□□□ 0.4
CXCL12P48061 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.54■□□□□ 0.4
CXCL12P48061 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.54■□□□□ 0.4
CXCL12P48061 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.54■□□□□ 0.4
CXCL12P48061 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.54■□□□□ 0.4
CXCL12P48061 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CXCL12P48061 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.54■□□□□ 0.4
CXCL12P48061 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CXCL12P48061 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.54■□□□□ 0.4
CXCL12P48061 AC109322.1-201ENST00000524499 1264 ntBASIC17.54■□□□□ 0.4
CXCL12P48061 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
CXCL12P48061 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.54■□□□□ 0.4
CXCL12P48061 AC005498.2-205ENST00000593218 784 ntBASIC17.54■□□□□ 0.4
CXCL12P48061 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CXCL12P48061 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.54■□□□□ 0.4
CXCL12P48061 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.54■□□□□ 0.4
CXCL12P48061 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CXCL12P48061 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CXCL12P48061 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CXCL12P48061 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.53■□□□□ 0.4
CXCL12P48061 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.53■□□□□ 0.4
CXCL12P48061 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.53■□□□□ 0.4
CXCL12P48061 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.53■□□□□ 0.4
CXCL12P48061 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.53■□□□□ 0.4
CXCL12P48061 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.53■□□□□ 0.4
CXCL12P48061 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CXCL12P48061 AC009336.1-201ENST00000608941 1553 ntBASIC17.53■□□□□ 0.4
CXCL12P48061 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
CXCL12P48061 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 RNA5SP421-201ENST00000516864 134 ntBASIC17.52■□□□□ 0.4
CXCL12P48061 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.52■□□□□ 0.4
CXCL12P48061 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.52■□□□□ 0.4
CXCL12P48061 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.52■□□□□ 0.4
CXCL12P48061 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.52■□□□□ 0.4
CXCL12P48061 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CXCL12P48061 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
CXCL12P48061 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CXCL12P48061 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.52■□□□□ 0.4
CXCL12P48061 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL12P48061 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CXCL12P48061 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms