Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
NKX2-1P43699 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX2-1P43699 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 KRT18P23-201ENST00000435622 1283 ntBASIC14.54□□□□□ -0.08
NKX2-1P43699 AC133681.1-201ENST00000465482 601 ntBASIC14.54□□□□□ -0.08
NKX2-1P43699 B3GAT3P1-201ENST00000471720 806 ntBASIC14.54□□□□□ -0.08
NKX2-1P43699 AC011506.1-201ENST00000474329 610 ntBASIC14.54□□□□□ -0.08
NKX2-1P43699 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC14.54□□□□□ -0.08
NKX2-1P43699 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 AP000692.2-201ENST00000608391 879 ntBASIC14.54□□□□□ -0.08
NKX2-1P43699 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX2-1P43699 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX2-1P43699 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.54□□□□□ -0.08
NKX2-1P43699 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
NKX2-1P43699 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
NKX2-1P43699 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NKX2-1P43699 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 AC046158.3-201ENST00000624947 2558 ntBASIC14.54□□□□□ -0.08
NKX2-1P43699 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
NKX2-1P43699 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-1P43699 AGGF1P2-201ENST00000426656 2106 ntBASIC14.53□□□□□ -0.08
NKX2-1P43699 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-1P43699 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
NKX2-1P43699 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
NKX2-1P43699 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-1P43699 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC14.53□□□□□ -0.08
NKX2-1P43699 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.53□□□□□ -0.08
NKX2-1P43699 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-1P43699 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
NKX2-1P43699 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 MMAB-206ENST00000540016 945 ntTSL 3 BASIC14.53□□□□□ -0.08
NKX2-1P43699 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
NKX2-1P43699 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.53□□□□□ -0.08
NKX2-1P43699 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC14.53□□□□□ -0.08
NKX2-1P43699 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NKX2-1P43699 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.52□□□□□ -0.08
NKX2-1P43699 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX2-1P43699 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX2-1P43699 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
NKX2-1P43699 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.52□□□□□ -0.08
NKX2-1P43699 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
NKX2-1P43699 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX2-1P43699 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
NKX2-1P43699 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NKX2-1P43699 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
NKX2-1P43699 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX2-1P43699 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC14.52□□□□□ -0.09
NKX2-1P43699 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC14.52□□□□□ -0.09
NKX2-1P43699 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NKX2-1P43699 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NKX2-1P43699 AC116407.2-201ENST00000613639 860 ntBASIC14.52□□□□□ -0.09
NKX2-1P43699 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX2-1P43699 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NKX2-1P43699 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX2-1P43699 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NKX2-1P43699 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms