Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 SIRPAP1-201ENST00000448467 1770 ntBASIC13.54□□□□□ -0.24
HLA-DMBP28068 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 AK4P3-201ENST00000418260 669 ntBASIC13.54□□□□□ -0.24
HLA-DMBP28068 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 AC022211.2-201ENST00000585075 2527 ntBASIC13.54□□□□□ -0.24
HLA-DMBP28068 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 PRORSD1P-202ENST00000563365 2154 ntBASIC13.54□□□□□ -0.24
HLA-DMBP28068 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
HLA-DMBP28068 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
HLA-DMBP28068 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 AL023806.1-201ENST00000603994 1649 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 AC009949.1-201ENST00000623048 1830 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 CROCCP2-202ENST00000412962 2773 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 CD70-202ENST00000423145 881 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 PVRIG2P-201ENST00000435460 978 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 GCSHP2-201ENST00000560971 527 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 NEK4P2-201ENST00000580004 1012 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 NT5C-211ENST00000582170 653 ntTSL 3 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 AC006011.2-201ENST00000621313 1158 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 AL023973.1-201ENST00000624619 620 ntBASIC13.53□□□□□ -0.24
HLA-DMBP28068 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HLA-DMBP28068 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC13.53□□□□□ -0.24
HLA-DMBP28068 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
HLA-DMBP28068 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
HLA-DMBP28068 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
HLA-DMBP28068 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.52□□□□□ -0.24
HLA-DMBP28068 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HLA-DMBP28068 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HLA-DMBP28068 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms