Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
BDNFP23560 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
BDNFP23560 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
BDNFP23560 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.68■□□□□ 0.58
BDNFP23560 AC103564.2-201ENST00000432853 1299 ntBASIC18.68■□□□□ 0.58
BDNFP23560 DDX43P3-201ENST00000441064 443 ntBASIC18.68■□□□□ 0.58
BDNFP23560 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.68■□□□□ 0.58
BDNFP23560 SART3-203ENST00000546611 1184 ntBASIC18.68■□□□□ 0.58
BDNFP23560 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.68■□□□□ 0.58
BDNFP23560 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.68■□□□□ 0.58
BDNFP23560 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.68■□□□□ 0.58
BDNFP23560 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 AD001527.2-201ENST00000622994 785 ntBASIC18.68■□□□□ 0.58
BDNFP23560 AC148477.8-201ENST00000624298 468 ntBASIC18.68■□□□□ 0.58
BDNFP23560 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.68■□□□□ 0.58
BDNFP23560 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
BDNFP23560 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
BDNFP23560 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
BDNFP23560 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
BDNFP23560 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.67■□□□□ 0.58
BDNFP23560 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.67■□□□□ 0.58
BDNFP23560 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 SCARNA2-201ENST00000458748 420 ntBASIC18.67■□□□□ 0.58
BDNFP23560 AC079776.4-201ENST00000511039 504 ntBASIC18.67■□□□□ 0.58
BDNFP23560 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.67■□□□□ 0.58
BDNFP23560 BX276092.7-203ENST00000637198 1536 ntBASIC18.67■□□□□ 0.58
BDNFP23560 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
BDNFP23560 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 PMPCAP1-201ENST00000508114 1576 ntBASIC18.67■□□□□ 0.58
BDNFP23560 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
BDNFP23560 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
BDNFP23560 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.67■□□□□ 0.58
BDNFP23560 AL356309.3-201ENST00000624132 1934 ntBASIC18.66■□□□□ 0.58
BDNFP23560 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.66■□□□□ 0.58
BDNFP23560 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.66■□□□□ 0.58
BDNFP23560 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.66■□□□□ 0.58
BDNFP23560 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.66■□□□□ 0.58
BDNFP23560 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC18.66■□□□□ 0.58
BDNFP23560 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.66■□□□□ 0.58
BDNFP23560 KRT18P67-201ENST00000432816 1264 ntBASIC18.66■□□□□ 0.58
BDNFP23560 AF186996.4-201ENST00000467186 377 ntBASIC18.66■□□□□ 0.58
BDNFP23560 PPIE-208ENST00000470213 927 ntTSL 3 BASIC18.66■□□□□ 0.58
BDNFP23560 RNPS1P1-201ENST00000507437 918 ntBASIC18.66■□□□□ 0.58
BDNFP23560 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.66■□□□□ 0.58
BDNFP23560 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.66■□□□□ 0.58
BDNFP23560 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.66■□□□□ 0.58
BDNFP23560 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 AC064862.7-201ENST00000604520 867 ntBASIC18.66■□□□□ 0.58
BDNFP23560 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
BDNFP23560 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.66■□□□□ 0.58
BDNFP23560 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.66■□□□□ 0.58
BDNFP23560 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
BDNFP23560 HLA-A-201ENST00000376802 1334 ntBASIC18.66■□□□□ 0.58
BDNFP23560 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.66■□□□□ 0.58
BDNFP23560 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
BDNFP23560 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
BDNFP23560 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.66■□□□□ 0.58
BDNFP23560 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.66■□□□□ 0.58
BDNFP23560 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
BDNFP23560 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BDNFP23560 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms