Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.19■□□□□ 0.5
VCANP13611 KRT8P23-201ENST00000560090 1207 ntBASIC18.19■□□□□ 0.5
VCANP13611 RN7SL190P-201ENST00000582519 257 ntBASIC18.19■□□□□ 0.5
VCANP13611 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC18.19■□□□□ 0.5
VCANP13611 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.19■□□□□ 0.5
VCANP13611 AC084121.4-201ENST00000641598 221 ntBASIC18.19■□□□□ 0.5
VCANP13611 AF228730.8-201ENST00000642140 221 ntBASIC18.19■□□□□ 0.5
VCANP13611 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VCANP13611 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.18■□□□□ 0.5
VCANP13611 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
VCANP13611 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VCANP13611 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
VCANP13611 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
VCANP13611 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.18■□□□□ 0.5
VCANP13611 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC18.18■□□□□ 0.5
VCANP13611 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
VCANP13611 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.18■□□□□ 0.5
VCANP13611 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.18■□□□□ 0.5
VCANP13611 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VCANP13611 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.17■□□□□ 0.5
VCANP13611 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
VCANP13611 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.17■□□□□ 0.5
VCANP13611 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
VCANP13611 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.17■□□□□ 0.5
VCANP13611 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.17■□□□□ 0.5
VCANP13611 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.17■□□□□ 0.5
VCANP13611 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC18.17■□□□□ 0.5
VCANP13611 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.17■□□□□ 0.5
VCANP13611 AC243562.1-201ENST00000560672 389 ntBASIC18.17■□□□□ 0.5
VCANP13611 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VCANP13611 SPDYE7P-202ENST00000420373 878 ntBASIC18.17■□□□□ 0.5
VCANP13611 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.17■□□□□ 0.5
VCANP13611 AL805961.1-202ENST00000641562 540 ntBASIC18.17■□□□□ 0.5
VCANP13611 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.17■□□□□ 0.5
VCANP13611 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.16■□□□□ 0.5
VCANP13611 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.16■□□□□ 0.5
VCANP13611 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.16■□□□□ 0.5
VCANP13611 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC18.16■□□□□ 0.5
VCANP13611 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.16■□□□□ 0.5
VCANP13611 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.16■□□□□ 0.5
VCANP13611 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VCANP13611 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VCANP13611 AL135744.1-201ENST00000565098 629 ntBASIC18.16■□□□□ 0.5
VCANP13611 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
VCANP13611 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.16■□□□□ 0.5
VCANP13611 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
VCANP13611 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.16■□□□□ 0.5
VCANP13611 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 AC006116.8-202ENST00000587620 1550 ntBASIC18.16■□□□□ 0.5
VCANP13611 DGCR5-201ENST00000399539 862 ntBASIC18.16■□□□□ 0.5
VCANP13611 AC092506.1-202ENST00000401022 528 ntBASIC18.16■□□□□ 0.5
VCANP13611 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.16■□□□□ 0.5
VCANP13611 AL592309.1-201ENST00000443127 649 ntBASIC18.16■□□□□ 0.5
VCANP13611 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCANP13611 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC18.16■□□□□ 0.5
VCANP13611 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VCANP13611 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.15■□□□□ 0.5
VCANP13611 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 AC100803.2-201ENST00000562459 1963 ntBASIC18.15■□□□□ 0.5
VCANP13611 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.15■□□□□ 0.5
VCANP13611 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.15■□□□□ 0.5
VCANP13611 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VCANP13611 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VCANP13611 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCANP13611 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.15■□□□□ 0.5
VCANP13611 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms