Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC23.3■■□□□ 1.32
COL3A1P02461 AC034105.1-201ENST00000563488 319 ntBASIC23.3■■□□□ 1.32
COL3A1P02461 AL356488.2-201ENST00000602755 427 ntBASIC23.3■■□□□ 1.32
COL3A1P02461 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
COL3A1P02461 AC006504.4-201ENST00000592118 1568 ntBASIC23.3■■□□□ 1.32
COL3A1P02461 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC23.3■■□□□ 1.32
COL3A1P02461 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC23.3■■□□□ 1.32
COL3A1P02461 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.3■■□□□ 1.32
COL3A1P02461 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC23.3■■□□□ 1.32
COL3A1P02461 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC23.3■■□□□ 1.32
COL3A1P02461 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC23.3■■□□□ 1.32
COL3A1P02461 ACTG1P4-201ENST00000425123 1122 ntBASIC23.3■■□□□ 1.32
COL3A1P02461 ARTN-206ENST00000472435 402 ntTSL 3 BASIC23.3■■□□□ 1.32
COL3A1P02461 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 MSRA-206ENST00000521209 814 ntTSL 3 BASIC23.3■■□□□ 1.32
COL3A1P02461 AL353135.1-201ENST00000606729 504 ntBASIC23.3■■□□□ 1.32
COL3A1P02461 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC23.3■■□□□ 1.32
COL3A1P02461 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
COL3A1P02461 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
COL3A1P02461 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC23.29■■□□□ 1.32
COL3A1P02461 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC23.29■■□□□ 1.32
COL3A1P02461 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC23.29■■□□□ 1.32
COL3A1P02461 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC23.29■■□□□ 1.32
COL3A1P02461 AC092910.1-201ENST00000482027 1129 ntBASIC23.29■■□□□ 1.32
COL3A1P02461 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC23.29■■□□□ 1.32
COL3A1P02461 AC105339.3-201ENST00000560043 636 ntBASIC23.29■■□□□ 1.32
COL3A1P02461 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC23.29■■□□□ 1.32
COL3A1P02461 AC006557.2-201ENST00000592985 1240 ntBASIC23.29■■□□□ 1.32
COL3A1P02461 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
COL3A1P02461 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
COL3A1P02461 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC23.28■■□□□ 1.32
COL3A1P02461 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC23.28■■□□□ 1.32
COL3A1P02461 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC23.28■■□□□ 1.32
COL3A1P02461 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC23.28■■□□□ 1.32
COL3A1P02461 CD276-203ENST00000537340 2439 ntTSL 2 BASIC23.28■■□□□ 1.32
COL3A1P02461 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.28■■□□□ 1.32
COL3A1P02461 SIGLEC30P-201ENST00000455569 941 ntBASIC23.28■■□□□ 1.32
COL3A1P02461 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.28■■□□□ 1.32
COL3A1P02461 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.28■■□□□ 1.32
COL3A1P02461 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC23.28■■□□□ 1.32
COL3A1P02461 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC23.28■■□□□ 1.32
COL3A1P02461 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
COL3A1P02461 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC23.27■■□□□ 1.32
COL3A1P02461 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 AL135999.2-201ENST00000622438 1686 ntBASIC23.27■■□□□ 1.32
COL3A1P02461 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC23.27■■□□□ 1.32
COL3A1P02461 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC23.27■■□□□ 1.32
COL3A1P02461 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC23.27■■□□□ 1.32
COL3A1P02461 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
COL3A1P02461 AL805961.1-202ENST00000641562 540 ntBASIC23.27■■□□□ 1.32
COL3A1P02461 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC23.27■■□□□ 1.32
COL3A1P02461 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC23.27■■□□□ 1.32
COL3A1P02461 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC23.27■■□□□ 1.32
COL3A1P02461 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
COL3A1P02461 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC23.26■■□□□ 1.31
COL3A1P02461 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL3A1P02461 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL3A1P02461 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
COL3A1P02461 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC23.26■■□□□ 1.31
COL3A1P02461 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC23.26■■□□□ 1.31
COL3A1P02461 RIN3-211ENST00000557762 517 ntTSL 3 BASIC23.26■■□□□ 1.31
COL3A1P02461 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms