Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.18■□□□□ 0.34
LDLRP01130 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.18■□□□□ 0.34
LDLRP01130 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
LDLRP01130 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
LDLRP01130 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
LDLRP01130 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 KRT8P11-201ENST00000409686 1436 ntBASIC17.17■□□□□ 0.34
LDLRP01130 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 Z85996.1-201ENST00000494644 937 ntBASIC17.17■□□□□ 0.34
LDLRP01130 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC17.17■□□□□ 0.34
LDLRP01130 KRT18P41-201ENST00000518924 1277 ntBASIC17.17■□□□□ 0.34
LDLRP01130 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.17■□□□□ 0.34
LDLRP01130 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
LDLRP01130 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
LDLRP01130 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.17■□□□□ 0.34
LDLRP01130 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
LDLRP01130 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LDLRP01130 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LDLRP01130 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
LDLRP01130 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 AP000523.1-201ENST00000398242 1049 ntBASIC17.16■□□□□ 0.34
LDLRP01130 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 MIR3652-201ENST00000579335 131 ntBASIC17.16■□□□□ 0.34
LDLRP01130 NPAP1P7-201ENST00000613027 823 ntBASIC17.16■□□□□ 0.34
LDLRP01130 HYMAI.1-201ENST00000620949 238 ntBASIC17.16■□□□□ 0.34
LDLRP01130 CR769767.2-201ENST00000622735 460 ntBASIC17.16■□□□□ 0.34
LDLRP01130 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
LDLRP01130 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.16■□□□□ 0.34
LDLRP01130 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.16■□□□□ 0.34
LDLRP01130 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LDLRP01130 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.16■□□□□ 0.34
LDLRP01130 CROCCP1-201ENST00000426910 5675 ntBASIC17.16■□□□□ 0.34
LDLRP01130 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
LDLRP01130 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.15■□□□□ 0.34
LDLRP01130 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LDLRP01130 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
LDLRP01130 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LDLRP01130 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms