Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM38O00635 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM38O00635 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM38O00635 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM38O00635 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TRIM38O00635 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM38O00635 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRIM38O00635 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM38O00635 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 TSPY12P-201ENST00000421279 868 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM38O00635 SAPCD2P3-201ENST00000455031 850 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 MINOS1P3-201ENST00000457048 203 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM38O00635 AF238378.1-201ENST00000526806 358 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM38O00635 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM38O00635 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 AC011840.4-201ENST00000578471 627 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM38O00635 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 AC004263.2-201ENST00000617183 678 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 REXO1L6P-202ENST00000619970 1078 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.86■□□□□ 0.45
TRIM38O00635 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
TRIM38O00635 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 AC138028.4-201ENST00000564984 1845 ntBASIC17.86■□□□□ 0.45
TRIM38O00635 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRIM38O00635 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM38O00635 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM38O00635 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.85■□□□□ 0.45
TRIM38O00635 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
TRIM38O00635 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
TRIM38O00635 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
TRIM38O00635 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM38O00635 MTMR9LP-203ENST00000426597 1545 ntBASIC17.85■□□□□ 0.45
TRIM38O00635 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRIM38O00635 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
TRIM38O00635 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM38O00635 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM38O00635 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.85■□□□□ 0.45
TRIM38O00635 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.85■□□□□ 0.45
TRIM38O00635 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TRIM38O00635 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM38O00635 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
TRIM38O00635 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
TRIM38O00635 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM38O00635 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM38O00635 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM38O00635 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM38O00635 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM38O00635 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM38O00635 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM38O00635 AL163051.1-201ENST00000569214 1512 ntBASIC17.84■□□□□ 0.45
TRIM38O00635 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM38O00635 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM38O00635 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM38O00635 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM38O00635 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
TRIM38O00635 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms