Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC006504.4-201ENST00000592118 1568 ntBASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDHGA1Q9Y5H4 AL049812.1-201ENST00000432563 2267 ntBASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 RPS15P9-201ENST00000494093 319 ntBASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDHGA1Q9Y5H4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 FAM8A3P-201ENST00000427218 844 ntBASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDHGA1Q9Y5H4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 ACTG1P14-201ENST00000446382 1122 ntBASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 CEND1P1-201ENST00000451006 455 ntBASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 SIGLEC30P-201ENST00000455569 941 ntBASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 AC018845.2-201ENST00000568326 409 ntBASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 AC010654.1-201ENST00000615722 808 ntBASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 GPR89P-201ENST00000407924 1495 ntBASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDHGA1Q9Y5H4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 LETM1P2-201ENST00000597330 2178 ntBASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PCDHGA1Q9Y5H4 MIR770-201ENST00000390219 98 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms