Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB3Q9Y5E6 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 KRT8P10-201ENST00000450021 1447 ntBASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 SNCG-201ENST00000348795 684 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 AC012615.1-201ENST00000565797 1299 ntBASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 AC008687.5-201ENST00000593746 558 ntBASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 AL645608.8-201ENST00000606034 2086 ntBASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB3Q9Y5E6 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 RN7SL602P-201ENST00000578326 324 ntBASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 IFNL4P1-201ENST00000607083 540 ntBASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 IGHV3-41-201ENST00000613121 348 ntBASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 AC009053.2-201ENST00000563701 2365 ntBASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 AL096828.2-201ENST00000567259 1965 ntBASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB3Q9Y5E6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.38
PCDHB3Q9Y5E6 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.38
PCDHB3Q9Y5E6 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHB3Q9Y5E6 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHB3Q9Y5E6 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms