Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 AC018470.1-201ENST00000624790 3129 ntBASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 AC004832.2-201ENST00000426397 482 ntBASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC13.73□□□□□ -0.21
NOTCH3Q9UM47 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 YBX2P1-201ENST00000394192 760 ntBASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ABCD1P5-201ENST00000445663 754 ntBASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 KRT18P3-201ENST00000451602 1288 ntBASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 NARF-204ENST00000390006 1766 ntTSL 2 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 HOTTIP_1.1-201ENST00000620415 57 ntBASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 CAND2-206ENST00000626378 333 ntTSL 5 BASIC13.72□□□□□ -0.21
NOTCH3Q9UM47 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 AC004967.1-201ENST00000453589 447 ntBASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 AC021087.4-201ENST00000563761 564 ntBASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 AC027796.2-201ENST00000575326 344 ntBASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 AC134684.3-201ENST00000641758 218 ntBASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
NOTCH3Q9UM47 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
NOTCH3Q9UM47 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms