Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 ABHD17AP1-201ENST00000358206 933 ntBASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 RPS2P55-201ENST00000397318 883 ntBASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 TSPY20P-201ENST00000450910 630 ntBASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 AC107956.1-201ENST00000494359 873 ntBASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 AC063926.3-201ENST00000624734 5658 ntBASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 SDHAP2-201ENST00000455183 2001 ntBASIC15.33■□□□□ 0.04
CHMP1AQ9HD42 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 PP12613-201ENST00000424958 2230 ntBASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 UBE2SP1-201ENST00000450587 669 ntBASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 MIR4674-201ENST00000582457 87 ntBASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 REXO1L10P-201ENST00000615707 1290 ntBASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 REXO1L12P-201ENST00000622156 912 ntBASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 AC068587.6-202ENST00000641839 5619 ntBASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 AC022211.2-201ENST00000585075 2527 ntBASIC15.32■□□□□ 0.04
CHMP1AQ9HD42 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 AC026471.5-201ENST00000615068 467 ntBASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 AC113410.3-201ENST00000623366 203 ntBASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHMP1AQ9HD42 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms