Protein–RNA interactions for Protein: Q9BT78

COPS4, COP9 signalosome complex subunit 4, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPS4Q9BT78 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.33■□□□□ 0.2
COPS4Q9BT78 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.33■□□□□ 0.2
COPS4Q9BT78 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
COPS4Q9BT78 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
COPS4Q9BT78 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COPS4Q9BT78 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.33■□□□□ 0.2
COPS4Q9BT78 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
COPS4Q9BT78 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
COPS4Q9BT78 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.33■□□□□ 0.2
COPS4Q9BT78 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.33■□□□□ 0.2
COPS4Q9BT78 AC011270.2-201ENST00000624293 2550 ntBASIC16.33■□□□□ 0.2
COPS4Q9BT78 PCDH8P1-201ENST00000428983 2773 ntBASIC16.32■□□□□ 0.2
COPS4Q9BT78 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 MCCD1P1-208ENST00000445732 328 ntBASIC16.32■□□□□ 0.2
COPS4Q9BT78 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 AL163051.1-201ENST00000569214 1512 ntBASIC16.32■□□□□ 0.2
COPS4Q9BT78 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
COPS4Q9BT78 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.32■□□□□ 0.2
COPS4Q9BT78 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 AC105020.1-201ENST00000435356 2205 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 MIR149-201ENST00000384879 89 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 CRYGFP-201ENST00000418459 633 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 AC026471.5-201ENST00000615068 467 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 REXO1L10P-201ENST00000615707 1290 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 AC008622.2-201ENST00000617006 1229 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 REXO1L12P-201ENST00000622156 912 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 PCDHA14-201ENST00000506751 2298 ntBASIC16.31■□□□□ 0.2
COPS4Q9BT78 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COPS4Q9BT78 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.31■□□□□ 0.2
COPS4Q9BT78 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.3■□□□□ 0.2
COPS4Q9BT78 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COPS4Q9BT78 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms