Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM56Q9BRZ2 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM56Q9BRZ2 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.14■□□□□ 0.5
TRIM56Q9BRZ2 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM56Q9BRZ2 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM56Q9BRZ2 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
TRIM56Q9BRZ2 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 AL441883.1-201ENST00000566170 1045 ntBASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRIM56Q9BRZ2 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 AC099398.1-201ENST00000567919 2776 ntBASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 AL512604.3-201ENST00000569583 964 ntBASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
TRIM56Q9BRZ2 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 SPDYE15P-201ENST00000424157 909 ntBASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 NFIC-211ENST00000641145 8399 ntBASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 AC009949.1-201ENST00000623048 1830 ntBASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRIM56Q9BRZ2 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM56Q9BRZ2 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms