Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
COL12A1Q99715 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 HCG4-201ENST00000418983 998 ntBASIC15.38■□□□□ 0.05
COL12A1Q99715 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.38■□□□□ 0.05
COL12A1Q99715 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
COL12A1Q99715 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
COL12A1Q99715 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.38■□□□□ 0.05
COL12A1Q99715 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.38■□□□□ 0.05
COL12A1Q99715 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 MIR658-201ENST00000385210 100 ntBASIC15.37■□□□□ 0.05
COL12A1Q99715 AL592309.1-201ENST00000443127 649 ntBASIC15.37■□□□□ 0.05
COL12A1Q99715 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC15.37■□□□□ 0.05
COL12A1Q99715 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 MIR4538-201ENST00000581377 78 ntBASIC15.37■□□□□ 0.05
COL12A1Q99715 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.37■□□□□ 0.05
COL12A1Q99715 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
COL12A1Q99715 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.37■□□□□ 0.05
COL12A1Q99715 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.37■□□□□ 0.05
COL12A1Q99715 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.37■□□□□ 0.05
COL12A1Q99715 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC15.37■□□□□ 0.05
COL12A1Q99715 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC15.37■□□□□ 0.05
COL12A1Q99715 NAA38-206ENST00000576384 424 ntTSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC15.37■□□□□ 0.05
COL12A1Q99715 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
COL12A1Q99715 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC15.37■□□□□ 0.05
COL12A1Q99715 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 AC092580.3-201ENST00000430932 139 ntBASIC15.37■□□□□ 0.05
COL12A1Q99715 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 BAD-207ENST00000544785 525 ntTSL 3 BASIC15.37■□□□□ 0.05
COL12A1Q99715 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.37■□□□□ 0.05
COL12A1Q99715 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.37■□□□□ 0.05
COL12A1Q99715 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.37■□□□□ 0.05
COL12A1Q99715 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
COL12A1Q99715 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC15.37■□□□□ 0.05
COL12A1Q99715 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
COL12A1Q99715 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC15.36■□□□□ 0.05
COL12A1Q99715 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
COL12A1Q99715 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC15.36■□□□□ 0.05
COL12A1Q99715 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.36■□□□□ 0.05
COL12A1Q99715 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.36■□□□□ 0.05
COL12A1Q99715 KRT17P7-201ENST00000451704 1104 ntBASIC15.36■□□□□ 0.05
COL12A1Q99715 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
COL12A1Q99715 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC15.36■□□□□ 0.05
COL12A1Q99715 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC15.36■□□□□ 0.05
COL12A1Q99715 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 AL512384.1-201ENST00000406683 331 ntBASIC15.36■□□□□ 0.05
COL12A1Q99715 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.36■□□□□ 0.05
COL12A1Q99715 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.36■□□□□ 0.05
COL12A1Q99715 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.36■□□□□ 0.05
COL12A1Q99715 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.36■□□□□ 0.05
COL12A1Q99715 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.36■□□□□ 0.05
COL12A1Q99715 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.36■□□□□ 0.05
COL12A1Q99715 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.36■□□□□ 0.05
COL12A1Q99715 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
COL12A1Q99715 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
COL12A1Q99715 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
COL12A1Q99715 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
COL12A1Q99715 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
COL12A1Q99715 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms