Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.65■□□□□ 0.42
VPS35Q96QK1 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS35Q96QK1 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VPS35Q96QK1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.64■□□□□ 0.42
VPS35Q96QK1 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS35Q96QK1 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
VPS35Q96QK1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS35Q96QK1 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 CLEC4GP1-201ENST00000596555 870 ntBASIC17.64■□□□□ 0.41
VPS35Q96QK1 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
VPS35Q96QK1 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS35Q96QK1 OR6D1P-202ENST00000641007 5290 ntBASIC17.63■□□□□ 0.41
VPS35Q96QK1 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 AC106820.2-201ENST00000563775 3264 ntBASIC17.63■□□□□ 0.41
VPS35Q96QK1 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 AC005332.8-201ENST00000622750 2735 ntBASIC17.63■□□□□ 0.41
VPS35Q96QK1 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 AC007967.3-201ENST00000434308 558 ntBASIC17.63■□□□□ 0.41
VPS35Q96QK1 PRELID1P1-202ENST00000567272 903 ntBASIC17.63■□□□□ 0.41
VPS35Q96QK1 AC011467.2-201ENST00000598425 242 ntBASIC17.63■□□□□ 0.41
VPS35Q96QK1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS35Q96QK1 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS35Q96QK1 TP73-AS1-210ENST00000637775 1455 ntBASIC17.63■□□□□ 0.41
VPS35Q96QK1 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 SKP2-204ENST00000508514 821 ntTSL 3 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 AC096582.2-201ENST00000510860 516 ntBASIC17.62■□□□□ 0.41
VPS35Q96QK1 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS35Q96QK1 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS35Q96QK1 AC114341.1-201ENST00000618070 349 ntBASIC17.62■□□□□ 0.41
VPS35Q96QK1 AC009949.1-201ENST00000623048 1830 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms