Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC22.2■■□□□ 1.14
RC3H1Q5TC82 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC22.2■■□□□ 1.14
RC3H1Q5TC82 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.2■■□□□ 1.14
RC3H1Q5TC82 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC22.2■■□□□ 1.14
RC3H1Q5TC82 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H1Q5TC82 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
RC3H1Q5TC82 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
RC3H1Q5TC82 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 AC023141.5-201ENST00000458585 616 ntBASIC22.19■■□□□ 1.14
RC3H1Q5TC82 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
RC3H1Q5TC82 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 AC009949.1-201ENST00000623048 1830 ntBASIC22.18■■□□□ 1.14
RC3H1Q5TC82 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 ADH5P3-201ENST00000433842 1137 ntBASIC22.18■■□□□ 1.14
RC3H1Q5TC82 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 CYB561-216ENST00000582297 897 ntTSL 3 BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 AC015911.4-201ENST00000588022 1070 ntBASIC22.18■■□□□ 1.14
RC3H1Q5TC82 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
RC3H1Q5TC82 AC100803.2-201ENST00000562459 1963 ntBASIC22.18■■□□□ 1.14
RC3H1Q5TC82 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 INO80C-206ENST00000586489 594 ntTSL 3 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 AC005498.2-205ENST00000593218 784 ntBASIC22.17■■□□□ 1.14
RC3H1Q5TC82 AC239800.4-201ENST00000603712 296 ntBASIC22.17■■□□□ 1.14
RC3H1Q5TC82 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
RC3H1Q5TC82 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PTMS-202ENST00000389462 773 ntTSL 2 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 GREM1-201ENST00000560677 623 ntTSL 4 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 ACTL9-202ENST00000612068 1252 ntBASIC22.16■■□□□ 1.14
RC3H1Q5TC82 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 LINC00628-201ENST00000628516 1289 ntBASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 AC006116.8-202ENST00000587620 1550 ntBASIC22.16■■□□□ 1.14
RC3H1Q5TC82 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
RC3H1Q5TC82 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms