Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC012618.2-201ENST00000428058 849 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC16.54■□□□□ 0.24
RFX4Q33E94 AL355355.2-201ENST00000442321 338 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC16.54■□□□□ 0.24
RFX4Q33E94 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.54■□□□□ 0.24
RFX4Q33E94 AC233702.5-201ENST00000584107 538 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.54■□□□□ 0.24
RFX4Q33E94 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
RFX4Q33E94 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.54■□□□□ 0.24
RFX4Q33E94 AC099343.3-201ENST00000605834 2503 ntBASIC16.54■□□□□ 0.24
RFX4Q33E94 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
RFX4Q33E94 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
RFX4Q33E94 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
RFX4Q33E94 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.53■□□□□ 0.24
RFX4Q33E94 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
RFX4Q33E94 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
RFX4Q33E94 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.53■□□□□ 0.24
RFX4Q33E94 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.53■□□□□ 0.24
RFX4Q33E94 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.53■□□□□ 0.24
RFX4Q33E94 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.53■□□□□ 0.24
RFX4Q33E94 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 AL049637.2-201ENST00000641778 930 ntBASIC16.53■□□□□ 0.24
RFX4Q33E94 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
RFX4Q33E94 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 AC106886.4-201ENST00000623557 2502 ntBASIC16.53■□□□□ 0.24
RFX4Q33E94 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC16.53■□□□□ 0.24
RFX4Q33E94 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
RFX4Q33E94 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.53■□□□□ 0.24
RFX4Q33E94 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
RFX4Q33E94 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RFX4Q33E94 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RFX4Q33E94 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.52■□□□□ 0.24
RFX4Q33E94 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RFX4Q33E94 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
RFX4Q33E94 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
RFX4Q33E94 AC105020.1-201ENST00000435356 2205 ntBASIC16.52■□□□□ 0.24
RFX4Q33E94 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
RFX4Q33E94 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.52■□□□□ 0.24
RFX4Q33E94 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RFX4Q33E94 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.52■□□□□ 0.24
RFX4Q33E94 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.52■□□□□ 0.24
RFX4Q33E94 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.52■□□□□ 0.24
RFX4Q33E94 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.52■□□□□ 0.24
RFX4Q33E94 AP005242.2-201ENST00000580065 1175 ntBASIC16.52■□□□□ 0.24
RFX4Q33E94 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
RFX4Q33E94 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.52■□□□□ 0.23
RFX4Q33E94 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.52■□□□□ 0.23
RFX4Q33E94 PCDHB19P-201ENST00000570871 2371 ntBASIC16.52■□□□□ 0.23
RFX4Q33E94 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.52■□□□□ 0.23
RFX4Q33E94 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
RFX4Q33E94 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC16.52■□□□□ 0.23
RFX4Q33E94 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
RFX4Q33E94 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RFX4Q33E94 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.51■□□□□ 0.23
RFX4Q33E94 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RFX4Q33E94 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms