Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 UPF3AP3-201ENST00000420996 769 ntBASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SHROOM1Q2M3G4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 AL589182.2-201ENST00000619332 1049 ntBASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 MIR1199-201ENST00000621445 119 ntBASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 AC005593.1-201ENST00000624894 515 ntBASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SHROOM1Q2M3G4 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.61■□□□□ 0.89
SHROOM1Q2M3G4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 RNF165-205ENST00000588679 2904 ntBASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 AC108073.2-201ENST00000464002 357 ntBASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 RNA5SP416-201ENST00000516838 111 ntBASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 AC018845.2-201ENST00000568326 409 ntBASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC20.6■□□□□ 0.89
SHROOM1Q2M3G4 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms