Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIM2P55344 AC009949.1-201ENST00000623048 1830 ntBASIC16.86■□□□□ 0.29
LIM2P55344 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.86■□□□□ 0.29
LIM2P55344 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.86■□□□□ 0.29
LIM2P55344 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
LIM2P55344 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
LIM2P55344 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
LIM2P55344 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 LINC00265-3P-201ENST00000447588 903 ntBASIC16.86■□□□□ 0.29
LIM2P55344 VENTXP7-201ENST00000475503 772 ntBASIC16.86■□□□□ 0.29
LIM2P55344 AC091607.1-201ENST00000490318 1060 ntBASIC16.86■□□□□ 0.29
LIM2P55344 AP005901.3-202ENST00000581653 237 ntBASIC16.86■□□□□ 0.29
LIM2P55344 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.86■□□□□ 0.29
LIM2P55344 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 AC092329.2-201ENST00000598402 547 ntBASIC16.86■□□□□ 0.29
LIM2P55344 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.86■□□□□ 0.29
LIM2P55344 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.86■□□□□ 0.29
LIM2P55344 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
LIM2P55344 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIM2P55344 AC006116.8-202ENST00000587620 1550 ntBASIC16.85■□□□□ 0.29
LIM2P55344 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.85■□□□□ 0.29
LIM2P55344 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.85■□□□□ 0.29
LIM2P55344 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.85■□□□□ 0.29
LIM2P55344 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.85■□□□□ 0.29
LIM2P55344 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
LIM2P55344 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.85■□□□□ 0.29
LIM2P55344 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.85■□□□□ 0.29
LIM2P55344 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.85■□□□□ 0.29
LIM2P55344 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.85■□□□□ 0.29
LIM2P55344 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.85■□□□□ 0.29
LIM2P55344 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.85■□□□□ 0.29
LIM2P55344 AC005336.2-201ENST00000593183 939 ntBASIC16.85■□□□□ 0.29
LIM2P55344 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.85■□□□□ 0.29
LIM2P55344 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.85■□□□□ 0.29
LIM2P55344 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.85■□□□□ 0.29
LIM2P55344 AC139713.2-201ENST00000641328 2723 ntBASIC16.85■□□□□ 0.29
LIM2P55344 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.85■□□□□ 0.29
LIM2P55344 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIM2P55344 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.85■□□□□ 0.29
LIM2P55344 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.84■□□□□ 0.29
LIM2P55344 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.84■□□□□ 0.29
LIM2P55344 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIM2P55344 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.84■□□□□ 0.29
LIM2P55344 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LIM2P55344 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.84■□□□□ 0.29
LIM2P55344 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.84■□□□□ 0.29
LIM2P55344 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.84■□□□□ 0.29
LIM2P55344 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.84■□□□□ 0.29
LIM2P55344 Z69720.1-201ENST00000601483 472 ntBASIC16.84■□□□□ 0.29
LIM2P55344 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms