Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
SOX2P48431 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 TNRC18P3-201ENST00000441896 2691 ntBASIC15.66■□□□□ 0.1
SOX2P48431 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SOX2P48431 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
SOX2P48431 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.66■□□□□ 0.1
SOX2P48431 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 AL158047.1-201ENST00000445918 881 ntBASIC15.66■□□□□ 0.1
SOX2P48431 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 MIR3180-4-201ENST00000582223 153 ntBASIC15.66■□□□□ 0.1
SOX2P48431 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC15.66■□□□□ 0.1
SOX2P48431 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.66■□□□□ 0.1
SOX2P48431 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SOX2P48431 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX2P48431 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX2P48431 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
SOX2P48431 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.65■□□□□ 0.1
SOX2P48431 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 BX088651.1-201ENST00000540551 451 ntBASIC15.65■□□□□ 0.1
SOX2P48431 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.65■□□□□ 0.1
SOX2P48431 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 AC022898.2-201ENST00000616822 1312 ntBASIC15.65■□□□□ 0.1
SOX2P48431 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SOX2P48431 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC15.65■□□□□ 0.1
SOX2P48431 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.64■□□□□ 0.09
SOX2P48431 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SOX2P48431 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX2P48431 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
SOX2P48431 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
SOX2P48431 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX2P48431 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC15.64■□□□□ 0.09
SOX2P48431 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.64■□□□□ 0.09
SOX2P48431 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
SOX2P48431 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SOX2P48431 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms