Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL445228.2-201ENST00000605589 952 ntBASIC13.57□□□□□ -0.24
HLA-DMBP28068 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DMBP28068 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DMBP28068 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 AC104076.2-201ENST00000448912 469 ntBASIC13.56□□□□□ -0.24
HLA-DMBP28068 KRT18P35-201ENST00000510488 1269 ntBASIC13.56□□□□□ -0.24
HLA-DMBP28068 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 RMI2-205ENST00000576027 818 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 RBM42-202ENST00000586618 771 ntTSL 3 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
HLA-DMBP28068 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC13.56□□□□□ -0.24
HLA-DMBP28068 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 DUX4L26-201ENST00000489078 1255 ntBASIC13.55□□□□□ -0.24
HLA-DMBP28068 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 NME3-204ENST00000563498 920 ntTSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 AL512604.3-201ENST00000569583 964 ntBASIC13.55□□□□□ -0.24
HLA-DMBP28068 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 BOC-212ENST00000485230 2173 ntTSL 2 BASIC13.55□□□□□ -0.24
HLA-DMBP28068 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
HLA-DMBP28068 NF2-208ENST00000403435 2568 ntTSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms