Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 SYS1-203ENST00000414310 795 ntTSL 3 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 FAM8A3P-201ENST00000427218 844 ntBASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 PUS1-205ENST00000535067 838 ntTSL 3 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 AC109462.3-201ENST00000573934 613 ntBASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 AC027612.4-201ENST00000605371 583 ntBASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 AL805961.1-202ENST00000641562 540 ntBASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
CSB-PGBD3P0DP91 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 MIR770-201ENST00000390219 98 ntBASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 ATP6V0CP3-201ENST00000417255 467 ntBASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC23.41■■□□□ 1.34
CSB-PGBD3P0DP91 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 PTCHD3P3-201ENST00000403073 906 ntBASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 FAM58CP-201ENST00000435741 640 ntBASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 POLD4-207ENST00000531239 584 ntTSL 2 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 KRT19P2-202ENST00000557173 1012 ntBASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 AC096734.2-201ENST00000562054 433 ntBASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 AC019129.2-201ENST00000609837 1235 ntBASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 AQP6-205ENST00000618286 829 ntTSL 5 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 AC093028.1-201ENST00000622998 982 ntBASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC23.4■■□□□ 1.34
CSB-PGBD3P0DP91 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CSB-PGBD3P0DP91 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.34
CSB-PGBD3P0DP91 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC23.39■■□□□ 1.34
CSB-PGBD3P0DP91 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
CSB-PGBD3P0DP91 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.34
CSB-PGBD3P0DP91 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 RIN3-211ENST00000557762 517 ntTSL 3 BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 AC097637.2-201ENST00000624096 1997 ntBASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 AC018445.3-201ENST00000624177 1945 ntBASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CSB-PGBD3P0DP91 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC23.38■■□□□ 1.33
CSB-PGBD3P0DP91 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC23.38■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms