Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 HLA-J-203ENST00000494367 1087 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.72■□□□□ 0.43
COL4A2P08572 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.72■□□□□ 0.43
COL4A2P08572 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.72■□□□□ 0.43
COL4A2P08572 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
COL4A2P08572 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
COL4A2P08572 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
COL4A2P08572 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
COL4A2P08572 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.72■□□□□ 0.43
COL4A2P08572 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
COL4A2P08572 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
COL4A2P08572 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.72■□□□□ 0.43
COL4A2P08572 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.72■□□□□ 0.43
COL4A2P08572 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL4A2P08572 PAWRP1-201ENST00000451083 565 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 AC074386.1-202ENST00000463561 864 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 TNXA-203ENST00000507684 2038 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 IGHV3-52-201ENST00000519770 353 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 AC093520.2-201ENST00000561830 333 ntBASIC17.72■□□□□ 0.43
COL4A2P08572 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.72■□□□□ 0.43
COL4A2P08572 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
COL4A2P08572 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.72■□□□□ 0.43
COL4A2P08572 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
COL4A2P08572 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.71■□□□□ 0.43
COL4A2P08572 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A2P08572 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.71■□□□□ 0.43
COL4A2P08572 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.71■□□□□ 0.43
COL4A2P08572 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.71■□□□□ 0.43
COL4A2P08572 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
COL4A2P08572 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A2P08572 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.71■□□□□ 0.43
COL4A2P08572 AC105339.1-204ENST00000636249 355 ntBASIC17.71■□□□□ 0.43
COL4A2P08572 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.71■□□□□ 0.43
COL4A2P08572 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A2P08572 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL4A2P08572 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.71■□□□□ 0.43
COL4A2P08572 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.71■□□□□ 0.42
COL4A2P08572 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.71■□□□□ 0.42
COL4A2P08572 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
COL4A2P08572 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL4A2P08572 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A2P08572 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A2P08572 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A2P08572 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A2P08572 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A2P08572 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A2P08572 AL627223.1-201ENST00000416693 442 ntBASIC17.7■□□□□ 0.42
COL4A2P08572 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 SLC25A6P2-201ENST00000497974 877 ntBASIC17.7■□□□□ 0.42
COL4A2P08572 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.7■□□□□ 0.42
COL4A2P08572 AC107918.2-201ENST00000530817 355 ntBASIC17.7■□□□□ 0.42
COL4A2P08572 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A2P08572 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
COL4A2P08572 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.7■□□□□ 0.42
COL4A2P08572 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
COL4A2P08572 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.7■□□□□ 0.42
COL4A2P08572 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL4A2P08572 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
COL4A2P08572 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.7■□□□□ 0.42
COL4A2P08572 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL4A2P08572 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A2P08572 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
COL4A2P08572 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.69■□□□□ 0.42
COL4A2P08572 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.69■□□□□ 0.42
COL4A2P08572 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.69■□□□□ 0.42
COL4A2P08572 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms