Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
RTN3O95197 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
RTN3O95197 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.71■□□□□ 0.59
RTN3O95197 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.71■□□□□ 0.59
RTN3O95197 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RTN3O95197 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.71■□□□□ 0.59
RTN3O95197 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.7■□□□□ 0.58
RTN3O95197 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.7■□□□□ 0.58
RTN3O95197 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.7■□□□□ 0.58
RTN3O95197 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
RTN3O95197 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RTN3O95197 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
RTN3O95197 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.7■□□□□ 0.58
RTN3O95197 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.7■□□□□ 0.58
RTN3O95197 AC079781.3-201ENST00000449110 356 ntBASIC18.7■□□□□ 0.58
RTN3O95197 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.7■□□□□ 0.58
RTN3O95197 AL160237.2-201ENST00000556165 472 ntBASIC18.7■□□□□ 0.58
RTN3O95197 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.7■□□□□ 0.58
RTN3O95197 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.7■□□□□ 0.58
RTN3O95197 AC104692.2-201ENST00000603054 253 ntBASIC18.7■□□□□ 0.58
RTN3O95197 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.7■□□□□ 0.58
RTN3O95197 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.7■□□□□ 0.58
RTN3O95197 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.7■□□□□ 0.58
RTN3O95197 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.7■□□□□ 0.58
RTN3O95197 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RTN3O95197 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.69■□□□□ 0.58
RTN3O95197 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
RTN3O95197 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
RTN3O95197 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 KRT8P10-201ENST00000450021 1447 ntBASIC18.69■□□□□ 0.58
RTN3O95197 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.69■□□□□ 0.58
RTN3O95197 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 RBM17P3-201ENST00000417687 1192 ntBASIC18.69■□□□□ 0.58
RTN3O95197 AF238378.1-201ENST00000526806 358 ntBASIC18.69■□□□□ 0.58
RTN3O95197 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.69■□□□□ 0.58
RTN3O95197 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.69■□□□□ 0.58
RTN3O95197 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
RTN3O95197 REXO1L9P-201ENST00000604264 2108 ntBASIC18.69■□□□□ 0.58
RTN3O95197 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.69■□□□□ 0.58
RTN3O95197 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.69■□□□□ 0.58
RTN3O95197 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 AL390961.4-201ENST00000623958 2535 ntBASIC18.69■□□□□ 0.58
RTN3O95197 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RTN3O95197 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.68■□□□□ 0.58
RTN3O95197 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 AC122714.2-201ENST00000502787 707 ntBASIC18.68■□□□□ 0.58
RTN3O95197 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms