Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
CDKL5O76039 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL5O76039 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL5O76039 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
CDKL5O76039 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL5O76039 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL5O76039 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 REXO1L11P-201ENST00000620964 1927 ntBASIC20.65■□□□□ 0.9
CDKL5O76039 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL5O76039 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.65■□□□□ 0.9
CDKL5O76039 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC20.65■□□□□ 0.9
CDKL5O76039 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL5O76039 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL5O76039 AL353801.3-201ENST00000609898 542 ntBASIC20.65■□□□□ 0.9
CDKL5O76039 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.65■□□□□ 0.9
CDKL5O76039 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CDKL5O76039 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
CDKL5O76039 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDKL5O76039 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CDKL5O76039 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDKL5O76039 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDKL5O76039 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CDKL5O76039 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDKL5O76039 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 CHCHD2P8-201ENST00000429873 447 ntBASIC20.64■□□□□ 0.89
CDKL5O76039 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.64■□□□□ 0.89
CDKL5O76039 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.64■□□□□ 0.89
CDKL5O76039 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC20.64■□□□□ 0.89
CDKL5O76039 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.64■□□□□ 0.89
CDKL5O76039 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.64■□□□□ 0.89
CDKL5O76039 AC011840.4-201ENST00000578471 627 ntBASIC20.64■□□□□ 0.89
CDKL5O76039 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.64■□□□□ 0.89
CDKL5O76039 AC116407.4-201ENST00000623319 1061 ntBASIC20.64■□□□□ 0.89
CDKL5O76039 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.64■□□□□ 0.89
CDKL5O76039 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC20.64■□□□□ 0.89
CDKL5O76039 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.64■□□□□ 0.89
CDKL5O76039 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDKL5O76039 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CDKL5O76039 AL138688.1-201ENST00000624851 1594 ntBASIC20.63■□□□□ 0.89
CDKL5O76039 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.63■□□□□ 0.89
CDKL5O76039 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
CDKL5O76039 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC20.63■□□□□ 0.89
CDKL5O76039 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDKL5O76039 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CDKL5O76039 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CDKL5O76039 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDKL5O76039 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDKL5O76039 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.62■□□□□ 0.89
CDKL5O76039 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDKL5O76039 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.62■□□□□ 0.89
CDKL5O76039 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.62■□□□□ 0.89
CDKL5O76039 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.62■□□□□ 0.89
CDKL5O76039 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
CDKL5O76039 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
CDKL5O76039 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.62■□□□□ 0.89
CDKL5O76039 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
CDKL5O76039 PCED1CP-201ENST00000419887 785 ntBASIC20.62■□□□□ 0.89
CDKL5O76039 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDKL5O76039 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDKL5O76039 AC005104.2-201ENST00000427818 678 ntBASIC20.62■□□□□ 0.89
CDKL5O76039 AC246785.2-201ENST00000432512 513 ntBASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms