Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC22.23■■□□□ 1.15
CACNA1FO60840 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CACNA1FO60840 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC22.23■■□□□ 1.15
CACNA1FO60840 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC22.23■■□□□ 1.15
CACNA1FO60840 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC22.22■■□□□ 1.15
CACNA1FO60840 AC026396.1-201ENST00000419388 421 ntBASIC22.22■■□□□ 1.15
CACNA1FO60840 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC22.22■■□□□ 1.15
CACNA1FO60840 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC22.22■■□□□ 1.15
CACNA1FO60840 LITAF-211ENST00000572255 516 ntTSL 4 BASIC22.22■■□□□ 1.15
CACNA1FO60840 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC22.22■■□□□ 1.15
CACNA1FO60840 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
CACNA1FO60840 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
CACNA1FO60840 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
CACNA1FO60840 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
CACNA1FO60840 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC22.22■■□□□ 1.15
CACNA1FO60840 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
CACNA1FO60840 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC22.21■■□□□ 1.15
CACNA1FO60840 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 INIP-202ENST00000374236 874 ntTSL 2 BASIC22.21■■□□□ 1.15
CACNA1FO60840 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
CACNA1FO60840 BX005266.1-201ENST00000473402 457 ntBASIC22.21■■□□□ 1.15
CACNA1FO60840 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC22.21■■□□□ 1.15
CACNA1FO60840 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
CACNA1FO60840 WDR88-203ENST00000592765 651 ntTSL 5 BASIC22.21■■□□□ 1.15
CACNA1FO60840 AC006557.2-201ENST00000592985 1240 ntBASIC22.21■■□□□ 1.15
CACNA1FO60840 AL356488.2-201ENST00000602755 427 ntBASIC22.21■■□□□ 1.15
CACNA1FO60840 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC22.21■■□□□ 1.15
CACNA1FO60840 AL022326.1-202ENST00000641533 845 ntBASIC22.21■■□□□ 1.15
CACNA1FO60840 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC22.21■■□□□ 1.15
CACNA1FO60840 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC22.21■■□□□ 1.15
CACNA1FO60840 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
CACNA1FO60840 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
CACNA1FO60840 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC22.21■■□□□ 1.15
CACNA1FO60840 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC22.21■■□□□ 1.15
CACNA1FO60840 ELK2BP-201ENST00000415014 1224 ntBASIC22.21■■□□□ 1.15
CACNA1FO60840 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC22.21■■□□□ 1.15
CACNA1FO60840 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC22.21■■□□□ 1.15
CACNA1FO60840 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC22.21■■□□□ 1.15
CACNA1FO60840 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC22.21■■□□□ 1.15
CACNA1FO60840 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CACNA1FO60840 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC22.2■■□□□ 1.15
CACNA1FO60840 GPR89P-201ENST00000407924 1495 ntBASIC22.2■■□□□ 1.15
CACNA1FO60840 GNAS-203ENST00000306120 1878 ntBASIC22.2■■□□□ 1.15
CACNA1FO60840 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
CACNA1FO60840 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC22.2■■□□□ 1.14
CACNA1FO60840 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC22.2■■□□□ 1.14
CACNA1FO60840 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC22.2■■□□□ 1.14
CACNA1FO60840 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC22.2■■□□□ 1.14
CACNA1FO60840 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC22.2■■□□□ 1.14
CACNA1FO60840 SIGLEC30P-201ENST00000455569 941 ntBASIC22.2■■□□□ 1.14
CACNA1FO60840 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC22.2■■□□□ 1.14
CACNA1FO60840 RIN3-211ENST00000557762 517 ntTSL 3 BASIC22.2■■□□□ 1.14
CACNA1FO60840 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC22.2■■□□□ 1.14
CACNA1FO60840 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC22.2■■□□□ 1.14
CACNA1FO60840 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC22.2■■□□□ 1.14
CACNA1FO60840 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC22.2■■□□□ 1.14
CACNA1FO60840 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC22.2■■□□□ 1.14
CACNA1FO60840 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC22.2■■□□□ 1.14
CACNA1FO60840 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
CACNA1FO60840 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC22.2■■□□□ 1.14
CACNA1FO60840 IL9RP2-201ENST00000423948 1312 ntBASIC22.2■■□□□ 1.14
CACNA1FO60840 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
CACNA1FO60840 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC22.19■■□□□ 1.14
CACNA1FO60840 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC22.19■■□□□ 1.14
CACNA1FO60840 AC046185.3-201ENST00000623228 1824 ntBASIC22.19■■□□□ 1.14
CACNA1FO60840 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
CACNA1FO60840 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC22.19■■□□□ 1.14
CACNA1FO60840 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
CACNA1FO60840 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms