Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.54■□□□□ 0.24
PRKNO60260 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.54■□□□□ 0.24
PRKNO60260 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PRKNO60260 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.54■□□□□ 0.24
PRKNO60260 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.54■□□□□ 0.24
PRKNO60260 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PRKNO60260 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PRKNO60260 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.54■□□□□ 0.24
PRKNO60260 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PRKNO60260 AC068880.1-201ENST00000507289 2297 ntBASIC16.54■□□□□ 0.24
PRKNO60260 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.54■□□□□ 0.24
PRKNO60260 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PRKNO60260 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PRKNO60260 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.54■□□□□ 0.24
PRKNO60260 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.53■□□□□ 0.24
PRKNO60260 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.53■□□□□ 0.24
PRKNO60260 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 POM121L3P-201ENST00000419331 1163 ntBASIC16.53■□□□□ 0.24
PRKNO60260 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.53■□□□□ 0.24
PRKNO60260 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.53■□□□□ 0.24
PRKNO60260 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.53■□□□□ 0.24
PRKNO60260 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.53■□□□□ 0.24
PRKNO60260 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.53■□□□□ 0.24
PRKNO60260 AC111152.3-201ENST00000569699 673 ntBASIC16.53■□□□□ 0.24
PRKNO60260 RN7SL510P-201ENST00000581311 263 ntBASIC16.53■□□□□ 0.24
PRKNO60260 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.53■□□□□ 0.24
PRKNO60260 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.53■□□□□ 0.24
PRKNO60260 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PRKNO60260 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PRKNO60260 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.52■□□□□ 0.24
PRKNO60260 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.52■□□□□ 0.24
PRKNO60260 AC106820.2-201ENST00000563775 3264 ntBASIC16.52■□□□□ 0.24
PRKNO60260 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.52■□□□□ 0.24
PRKNO60260 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.52■□□□□ 0.24
PRKNO60260 AC022898.2-201ENST00000616822 1312 ntBASIC16.52■□□□□ 0.24
PRKNO60260 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.52■□□□□ 0.24
PRKNO60260 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PRKNO60260 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.52■□□□□ 0.24
PRKNO60260 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.52■□□□□ 0.24
PRKNO60260 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.52■□□□□ 0.24
PRKNO60260 EMBP1-201ENST00000458200 901 ntBASIC16.52■□□□□ 0.24
PRKNO60260 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.52■□□□□ 0.24
PRKNO60260 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC16.52■□□□□ 0.24
PRKNO60260 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.52■□□□□ 0.24
PRKNO60260 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 MIR5100-201ENST00000579544 119 ntBASIC16.52■□□□□ 0.24
PRKNO60260 AC114341.1-201ENST00000618070 349 ntBASIC16.52■□□□□ 0.24
PRKNO60260 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PRKNO60260 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PRKNO60260 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.52■□□□□ 0.24
PRKNO60260 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PRKNO60260 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
PRKNO60260 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PRKNO60260 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PRKNO60260 AC008764.6-201ENST00000595909 2069 ntBASIC16.52■□□□□ 0.23
PRKNO60260 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.52■□□□□ 0.23
PRKNO60260 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 AC010460.3-201ENST00000511359 1579 ntBASIC16.51■□□□□ 0.23
PRKNO60260 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
PRKNO60260 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.51■□□□□ 0.23
PRKNO60260 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.51■□□□□ 0.23
PRKNO60260 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
PRKNO60260 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.51■□□□□ 0.23
PRKNO60260 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.51■□□□□ 0.23
PRKNO60260 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 AKR1C7P-201ENST00000305623 895 ntBASIC16.51■□□□□ 0.23
PRKNO60260 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PRKNO60260 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms