Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC22.33■■□□□ 1.17
NPHP1O15259 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC22.33■■□□□ 1.17
NPHP1O15259 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
NPHP1O15259 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
NPHP1O15259 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
NPHP1O15259 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NPHP1O15259 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC22.33■■□□□ 1.17
NPHP1O15259 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC22.33■■□□□ 1.17
NPHP1O15259 AC136632.2-201ENST00000512891 861 ntBASIC22.33■■□□□ 1.17
NPHP1O15259 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC22.33■■□□□ 1.17
NPHP1O15259 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC22.33■■□□□ 1.17
NPHP1O15259 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC22.33■■□□□ 1.17
NPHP1O15259 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC22.33■■□□□ 1.17
NPHP1O15259 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
NPHP1O15259 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC22.33■■□□□ 1.17
NPHP1O15259 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
NPHP1O15259 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.16
NPHP1O15259 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
NPHP1O15259 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
NPHP1O15259 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC22.33■■□□□ 1.16
NPHP1O15259 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
NPHP1O15259 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC22.33■■□□□ 1.16
NPHP1O15259 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
NPHP1O15259 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.16
NPHP1O15259 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC22.32■■□□□ 1.16
NPHP1O15259 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 METTL26-205ENST00000397666 726 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 NKTR-203ENST00000442970 646 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC22.32■■□□□ 1.16
NPHP1O15259 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC22.32■■□□□ 1.16
NPHP1O15259 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 AC098818.2-201ENST00000564925 2320 ntBASIC22.32■■□□□ 1.16
NPHP1O15259 PMPCAP1-201ENST00000508114 1576 ntBASIC22.32■■□□□ 1.16
NPHP1O15259 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.32■■□□□ 1.16
NPHP1O15259 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
NPHP1O15259 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
NPHP1O15259 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
NPHP1O15259 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP1O15259 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 MED29-202ENST00000594368 1471 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP1O15259 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP1O15259 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC22.31■■□□□ 1.16
NPHP1O15259 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
NPHP1O15259 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC22.31■■□□□ 1.16
NPHP1O15259 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP1O15259 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC22.31■■□□□ 1.16
NPHP1O15259 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
NPHP1O15259 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC22.31■■□□□ 1.16
NPHP1O15259 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
NPHP1O15259 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC22.3■■□□□ 1.16
NPHP1O15259 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
NPHP1O15259 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC22.3■■□□□ 1.16
NPHP1O15259 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC22.3■■□□□ 1.16
NPHP1O15259 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC22.3■■□□□ 1.16
NPHP1O15259 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC22.3■■□□□ 1.16
NPHP1O15259 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC22.3■■□□□ 1.16
NPHP1O15259 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC22.3■■□□□ 1.16
NPHP1O15259 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC22.3■■□□□ 1.16
NPHP1O15259 RPS15-207ENST00000591032 550 ntTSL 3 BASIC22.3■■□□□ 1.16
NPHP1O15259 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 COPE-211ENST00000600932 1144 ntTSL 5 BASIC22.3■■□□□ 1.16
NPHP1O15259 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 ANO7L1-203ENST00000602586 1720 ntBASIC22.3■■□□□ 1.16
NPHP1O15259 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
NPHP1O15259 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms