Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 AC026120.1-201ENST00000611536 926 ntBASIC13.64□□□□□ -0.23
COL6A5A8TX70 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
COL6A5A8TX70 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
COL6A5A8TX70 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 AL158211.5-201ENST00000623583 2518 ntBASIC13.63□□□□□ -0.23
COL6A5A8TX70 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 AC009102.3-201ENST00000623118 1491 ntBASIC13.63□□□□□ -0.23
COL6A5A8TX70 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 TMPRSS11CP-201ENST00000453277 683 ntBASIC13.63□□□□□ -0.23
COL6A5A8TX70 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 MIR6869-201ENST00000619434 62 ntBASIC13.63□□□□□ -0.23
COL6A5A8TX70 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 AL391825.1-201ENST00000457671 1364 ntBASIC13.63□□□□□ -0.23
COL6A5A8TX70 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
COL6A5A8TX70 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
COL6A5A8TX70 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 AC112492.5-201ENST00000421897 457 ntBASIC13.62□□□□□ -0.23
COL6A5A8TX70 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 DFFBP1-201ENST00000433250 979 ntBASIC13.62□□□□□ -0.23
COL6A5A8TX70 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PTCHD3P3-201ENST00000403073 906 ntBASIC13.62□□□□□ -0.23
COL6A5A8TX70 AP006294.1-201ENST00000415407 339 ntBASIC13.62□□□□□ -0.23
COL6A5A8TX70 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 COG4-212ENST00000564653 590 ntTSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A5A8TX70 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC13.62□□□□□ -0.23
COL6A5A8TX70 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 AC103564.2-201ENST00000432853 1299 ntBASIC13.61□□□□□ -0.23
COL6A5A8TX70 AC140658.5-201ENST00000438532 169 ntBASIC13.61□□□□□ -0.23
COL6A5A8TX70 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 RNA5SP423-201ENST00000517127 109 ntBASIC13.61□□□□□ -0.23
COL6A5A8TX70 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms