Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 AC116407.2-201ENST00000613639 860 ntBASIC14.41□□□□□ -0.1
FOXA2Q9Y261 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
FOXA2Q9Y261 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 MED25-212ENST00000618715 1467 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 PVRIG2P-201ENST00000435460 978 ntBASIC14.4□□□□□ -0.1
FOXA2Q9Y261 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 NME3-204ENST00000563498 920 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
FOXA2Q9Y261 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 SAPCD2P2-201ENST00000431719 1174 ntBASIC14.39□□□□□ -0.11
FOXA2Q9Y261 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AL136038.4-201ENST00000603606 1261 ntBASIC14.39□□□□□ -0.11
FOXA2Q9Y261 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.39□□□□□ -0.11
FOXA2Q9Y261 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC14.39□□□□□ -0.11
FOXA2Q9Y261 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms