Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC079781.3-201ENST00000449110 356 ntBASIC18.99■□□□□ 0.63
SIX4Q9UIU6 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 LINC01711-201ENST00000598340 967 ntBASIC18.99■□□□□ 0.63
SIX4Q9UIU6 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 KRT8P10-201ENST00000450021 1447 ntBASIC18.99■□□□□ 0.63
SIX4Q9UIU6 AP005117.1-201ENST00000584346 1413 ntBASIC18.99■□□□□ 0.63
SIX4Q9UIU6 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SIX4Q9UIU6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 AC005104.2-201ENST00000427818 678 ntBASIC18.98■□□□□ 0.63
SIX4Q9UIU6 AC103564.2-201ENST00000432853 1299 ntBASIC18.98■□□□□ 0.63
SIX4Q9UIU6 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 PMPCAP1-201ENST00000508114 1576 ntBASIC18.98■□□□□ 0.63
SIX4Q9UIU6 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.98■□□□□ 0.63
SIX4Q9UIU6 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AC020763.4-201ENST00000623414 4170 ntBASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AL353593.2-201ENST00000602529 1483 ntBASIC18.97■□□□□ 0.63
SIX4Q9UIU6 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AC104692.2-201ENST00000603054 253 ntBASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AL031008.1-201ENST00000619963 541 ntBASIC18.97■□□□□ 0.63
SIX4Q9UIU6 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AC067852.2-201ENST00000590513 2313 ntBASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 AC134043.2-201ENST00000624206 2238 ntBASIC18.97■□□□□ 0.63
SIX4Q9UIU6 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 LINC00304-203ENST00000565008 1864 ntBASIC18.97■□□□□ 0.63
SIX4Q9UIU6 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SIX4Q9UIU6 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 AC004870.1-201ENST00000315132 882 ntBASIC18.96■□□□□ 0.63
SIX4Q9UIU6 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 AC109462.3-201ENST00000573934 613 ntBASIC18.96■□□□□ 0.63
SIX4Q9UIU6 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 AL355877.3-201ENST00000622820 899 ntBASIC18.96■□□□□ 0.63
SIX4Q9UIU6 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.96■□□□□ 0.63
SIX4Q9UIU6 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
SIX4Q9UIU6 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SIX4Q9UIU6 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.95■□□□□ 0.62
SIX4Q9UIU6 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.95■□□□□ 0.62
SIX4Q9UIU6 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.95■□□□□ 0.62
SIX4Q9UIU6 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SIX4Q9UIU6 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms