Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 AL356309.3-201ENST00000624132 1934 ntBASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 AL031284.1-201ENST00000419297 478 ntBASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 RNPS1P1-201ENST00000507437 918 ntBASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 AC079776.4-201ENST00000511039 504 ntBASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 AC116407.2-201ENST00000613639 860 ntBASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CLCF1Q9UBD9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC103564.2-201ENST00000432853 1299 ntBASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC021087.4-201ENST00000563761 564 ntBASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AD001527.2-201ENST00000622994 785 ntBASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AC009113.1-201ENST00000570267 2443 ntBASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 PMPCAP1-201ENST00000508114 1576 ntBASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
CLCF1Q9UBD9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 AL022342.1-201ENST00000400363 863 ntBASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 AP000347.1-202ENST00000435868 847 ntBASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 DDX43P3-201ENST00000441064 443 ntBASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.77■□□□□ 0.12
CLCF1Q9UBD9 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms