Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
VCX3AQ9NNX9 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
VCX3AQ9NNX9 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
VCX3AQ9NNX9 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 RAP2CP1-201ENST00000605103 478 ntBASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VCX3AQ9NNX9 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 HES2-206ENST00000489730 730 ntTSL 2 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCX3AQ9NNX9 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 CYP2T1P-202ENST00000641596 2535 ntBASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 AC006449.5-201ENST00000610658 2098 ntBASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 RER1-204ENST00000378518 522 ntTSL 3 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCX3AQ9NNX9 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms