Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 GNAQP1-201ENST00000444815 1067 ntBASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 CHCHD2P3-201ENST00000603038 451 ntBASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 RNA5-8SN1-201ENST00000610460 153 ntBASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 RNA5-8SN5-202ENST00000612463 153 ntBASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 RNA5-8SN4-201ENST00000613359 153 ntBASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 RNA5-8SN5-201ENST00000619471 153 ntBASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
COL25A1Q9BXS0 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 AF106564.1-201ENST00000607058 2553 ntBASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 KLF4P1-201ENST00000412782 1185 ntBASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 AL355994.2-201ENST00000447882 704 ntBASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 AC108725.1-201ENST00000495472 409 ntBASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 HNRNPUP1-201ENST00000554987 333 ntBASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 AC016629.1-201ENST00000596579 586 ntBASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL25A1Q9BXS0 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 CROCCP4-201ENST00000457096 498 ntBASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 MIR4722-201ENST00000578292 60 ntBASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL25A1Q9BXS0 SDHAP2-201ENST00000455183 2001 ntBASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
COL25A1Q9BXS0 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms